Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015928172.1_cds_XP_016475816.1_67712
CDS Infomation

[gene=LOC107797434] [db_xref=GeneID:107797434] [protein=E3 ubiquitin-protein ligase XBAT33-like] [protein_id=XP_016475816.1] [location=complement(join(3233..3771,5311..5402,6687..6830,6918..6964,7126..7184,7265..7425,7763..7941,8072..8143,8408..8467,8553..8729))] [gbkey=CDS]
Sequence

ATGGGGAATTCGTTTGGGTGCTCGGCGTCCGGCGAACGGCTGGTATCGGCGGCGAGAGAC
GGCGATTACGTGGAAGCAAAGATGTTGCTTGATTGCAATCCATGCCTCTCCAAATACTCT
ACTTTTGGTGGCCTCAATTCCCCTCTTCACTTTGCTGCCGCCAAAGGCCACAACGACATT
GTTGCGTTGTTGCTTGGGAACGGTGCTGATGTCAATTCTAGAAATTACTGTGGTCAGACG
GCATTGATGCAGGCGTGTCGATATGGTCACTGGGAAGTTGTTCAAACCCTTCTTCTTTTT
AGATGCAACGTTACGAGGGCGGATTATCTAAGTGGGAGGACAGCTCTCCATTTTGCAGCA
GTGAATGGACATGTTAGATGCATACGACTCGTGGTGGCTGATTTCGTTCCTAGTGCCCCT
TTTGATTCTATAAATGCTCAAACAGACAGGGGTGATAGTTCAAACTCAAAATGCAAGCAT
GAGCAAAGTGCACTGTCAAAATTTGTAAACAAAGCTGCTGATGGTGGTATTACTGCTCTT
CATATGGCTGCATTGAATGGATATTTTGATTGTGTCCAGCTCCTGCTTGATCTTAATGCA
AATGTATCAGCTGTGACATTTCACTATGGGTCATCGATGGATCTGATAGGAGCTGGAAGT
ACTCCTTTGCACTATGCTGCATGTGGAGGAAATCTAAAATGCTGTCAGATCCTTATTGCA
AGAGGTGCCAGTCGATTGACATTGAACTGCAATGGGTGGCTTCCTCTCGATGTTGCCAGG
ATGTGGGGGCGTCATTGGCTTGAACCGTTACTTGCACCAAATTCTGATTCAATAATTCCA
CCCTTTCCATCTTCAAGTTATTTATCGTTGCCTCTATTAAGCGTGCTTAACATCGCAAGA
GAGTGTGGCTTGCAGTCTTCAGCAACTTCGTCTGATGATTCTGATACTTGTGCCGTTTGC
CTGGAGAGGGTATGTTCAGTGTCTGCCGAAGGTTGTGGGCATCAATTGTGTGTAAGATGT
GCACTCTATCTTTGCTCTGCAAGCAACATCCCGTCTGAATTATTGGGTCCGCCTGGCTCC
ATTCCATGTCCACTTTGCAGACATGGCATTGTCTCATTTGTAAAACTCCCTGGGTCTCCT
GCAAAGGAATTTAAGTTACATCTATCCCTTAGCTTATGCACACCGTGCATGCTTCATCCT
CGTGAGCAAGATCGATCAACACCCTCTAGCGCACATGAAATTAGAAAGAATCGTGTTGCT
TCAGTGTCTTCTGATTTTTCCTGTCCTGTGACTTGTAGCCCATTTCCTTCTGTTGCAATC
CCTTTGTGTACTTGTGATGAAGGACCTTCCCCAACTTTGGAATCCATAGAAAATGACACT
CAAGATGAAACTTCTAATCAGTCACAGTCCACTTCAAATGACCAAGACAAAATGAATGTG
AGATTGGAGAAAACTACCTGCTCGAACATGTTTTGGGGCAGAAGAAGTTGCAGCAGGGAG
CATCAGTGTAATGCTGAGATTAATGCTTAA

Peptide Sequence

PEP ID

XP_016475816.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Nicotiana tabacum]
Sequence

MGNSFGCSASGERLVSAARDGDYVEAKMLLDCNPCLSKYSTFGGLNSPLHFAAAKGHNDI
VALLLGNGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA
VNGHVRCIRLVVADFVPSAPFDSINAQTDRGDSSNSKCKHEQSALSKFVNKAADGGITAL
HMAALNGYFDCVQLLLDLNANVSAVTFHYGSSMDLIGAGSTPLHYAACGGNLKCCQILIA
RGASRLTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPPFPSSSYLSLPLLSVLNIAR
ECGLQSSATSSDDSDTCAVCLERVCSVSAEGCGHQLCVRCALYLCSASNIPSELLGPPGS
IPCPLCRHGIVSFVKLPGSPAKEFKLHLSLSLCTPCMLHPREQDRSTPSSAHEIRKNRVA
SVSSDFSCPVTCSPFPSVAIPLCTCDEGPSPTLESIENDTQDETSNQSQSTSNDQDKMNV
RLEKTTCSNMFWGRRSCSREHQCNAEINA

Transcript Sequence

Gene sequence data has not been registered.